489 lines
16 KiB
Plaintext
489 lines
16 KiB
Plaintext
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// Copyright 2008 Gautam Sewani
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// Copyright 2008 John Maddock
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//
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// Use, modification and distribution are subject to the
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// Boost Software License, Version 1.0.
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// (See accompanying file LICENSE_1_0.txt
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// or copy at http://www.boost.org/LICENSE_1_0.txt)
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#ifndef BOOST_MATH_DISTRIBUTIONS_DETAIL_HG_PDF_HPP
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#define BOOST_MATH_DISTRIBUTIONS_DETAIL_HG_PDF_HPP
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#include <boost/math/constants/constants.hpp>
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#include <boost/math/special_functions/lanczos.hpp>
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#include <boost/math/special_functions/gamma.hpp>
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#include <boost/math/special_functions/pow.hpp>
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#include <boost/math/special_functions/prime.hpp>
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#include <boost/math/policies/error_handling.hpp>
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#ifdef BOOST_MATH_INSTRUMENT
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#include <typeinfo>
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#endif
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namespace boost{ namespace math{ namespace detail{
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template <class T, class Func>
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void bubble_down_one(T* first, T* last, Func f)
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{
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using std::swap;
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T* next = first;
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++next;
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while((next != last) && (!f(*first, *next)))
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{
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swap(*first, *next);
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++first;
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++next;
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}
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}
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template <class T>
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struct sort_functor
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{
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sort_functor(const T* exponents) : m_exponents(exponents){}
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bool operator()(int i, int j)
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{
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return m_exponents[i] > m_exponents[j];
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}
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private:
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const T* m_exponents;
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};
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template <class T, class Lanczos, class Policy>
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T hypergeometric_pdf_lanczos_imp(T /*dummy*/, unsigned x, unsigned r, unsigned n, unsigned N, const Lanczos&, const Policy&)
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{
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BOOST_MATH_STD_USING
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BOOST_MATH_INSTRUMENT_FPU
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BOOST_MATH_INSTRUMENT_VARIABLE(x);
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BOOST_MATH_INSTRUMENT_VARIABLE(r);
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BOOST_MATH_INSTRUMENT_VARIABLE(n);
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BOOST_MATH_INSTRUMENT_VARIABLE(N);
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BOOST_MATH_INSTRUMENT_VARIABLE(typeid(Lanczos).name());
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T bases[9] = {
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T(n) + static_cast<T>(Lanczos::g()) + 0.5f,
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T(r) + static_cast<T>(Lanczos::g()) + 0.5f,
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T(N - n) + static_cast<T>(Lanczos::g()) + 0.5f,
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T(N - r) + static_cast<T>(Lanczos::g()) + 0.5f,
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1 / (T(N) + static_cast<T>(Lanczos::g()) + 0.5f),
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1 / (T(x) + static_cast<T>(Lanczos::g()) + 0.5f),
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1 / (T(n - x) + static_cast<T>(Lanczos::g()) + 0.5f),
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1 / (T(r - x) + static_cast<T>(Lanczos::g()) + 0.5f),
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1 / (T(N - n - r + x) + static_cast<T>(Lanczos::g()) + 0.5f)
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};
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T exponents[9] = {
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n + T(0.5f),
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r + T(0.5f),
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N - n + T(0.5f),
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N - r + T(0.5f),
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N + T(0.5f),
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x + T(0.5f),
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n - x + T(0.5f),
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r - x + T(0.5f),
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N - n - r + x + T(0.5f)
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};
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int base_e_factors[9] = {
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-1, -1, -1, -1, 1, 1, 1, 1, 1
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};
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int sorted_indexes[9] = {
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0, 1, 2, 3, 4, 5, 6, 7, 8
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};
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#ifdef BOOST_MATH_INSTRUMENT
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BOOST_MATH_INSTRUMENT_FPU
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for(unsigned i = 0; i < 9; ++i)
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{
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BOOST_MATH_INSTRUMENT_VARIABLE(i);
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BOOST_MATH_INSTRUMENT_VARIABLE(bases[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(exponents[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(base_e_factors[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(sorted_indexes[i]);
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}
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#endif
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std::sort(sorted_indexes, sorted_indexes + 9, sort_functor<T>(exponents));
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#ifdef BOOST_MATH_INSTRUMENT
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BOOST_MATH_INSTRUMENT_FPU
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for(unsigned i = 0; i < 9; ++i)
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{
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BOOST_MATH_INSTRUMENT_VARIABLE(i);
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BOOST_MATH_INSTRUMENT_VARIABLE(bases[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(exponents[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(base_e_factors[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(sorted_indexes[i]);
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}
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#endif
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do{
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exponents[sorted_indexes[0]] -= exponents[sorted_indexes[1]];
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bases[sorted_indexes[1]] *= bases[sorted_indexes[0]];
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if((bases[sorted_indexes[1]] < tools::min_value<T>()) && (exponents[sorted_indexes[1]] != 0))
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{
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return 0;
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}
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base_e_factors[sorted_indexes[1]] += base_e_factors[sorted_indexes[0]];
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bubble_down_one(sorted_indexes, sorted_indexes + 9, sort_functor<T>(exponents));
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#ifdef BOOST_MATH_INSTRUMENT
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for(unsigned i = 0; i < 9; ++i)
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{
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BOOST_MATH_INSTRUMENT_VARIABLE(i);
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BOOST_MATH_INSTRUMENT_VARIABLE(bases[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(exponents[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(base_e_factors[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(sorted_indexes[i]);
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}
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#endif
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}while(exponents[sorted_indexes[1]] > 1);
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//
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// Combine equal powers:
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//
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int j = 8;
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while(exponents[sorted_indexes[j]] == 0) --j;
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while(j)
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{
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while(j && (exponents[sorted_indexes[j-1]] == exponents[sorted_indexes[j]]))
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{
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bases[sorted_indexes[j-1]] *= bases[sorted_indexes[j]];
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exponents[sorted_indexes[j]] = 0;
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base_e_factors[sorted_indexes[j-1]] += base_e_factors[sorted_indexes[j]];
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bubble_down_one(sorted_indexes + j, sorted_indexes + 9, sort_functor<T>(exponents));
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--j;
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}
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--j;
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#ifdef BOOST_MATH_INSTRUMENT
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BOOST_MATH_INSTRUMENT_VARIABLE(j);
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for(unsigned i = 0; i < 9; ++i)
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{
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BOOST_MATH_INSTRUMENT_VARIABLE(i);
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BOOST_MATH_INSTRUMENT_VARIABLE(bases[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(exponents[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(base_e_factors[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(sorted_indexes[i]);
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}
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#endif
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}
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#ifdef BOOST_MATH_INSTRUMENT
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BOOST_MATH_INSTRUMENT_FPU
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for(unsigned i = 0; i < 9; ++i)
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{
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BOOST_MATH_INSTRUMENT_VARIABLE(i);
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BOOST_MATH_INSTRUMENT_VARIABLE(bases[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(exponents[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(base_e_factors[i]);
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BOOST_MATH_INSTRUMENT_VARIABLE(sorted_indexes[i]);
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}
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#endif
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T result;
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BOOST_MATH_INSTRUMENT_VARIABLE(bases[sorted_indexes[0]] * exp(static_cast<T>(base_e_factors[sorted_indexes[0]])));
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BOOST_MATH_INSTRUMENT_VARIABLE(exponents[sorted_indexes[0]]);
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{
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BOOST_FPU_EXCEPTION_GUARD
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result = pow(bases[sorted_indexes[0]] * exp(static_cast<T>(base_e_factors[sorted_indexes[0]])), exponents[sorted_indexes[0]]);
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}
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BOOST_MATH_INSTRUMENT_VARIABLE(result);
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for(unsigned i = 1; (i < 9) && (exponents[sorted_indexes[i]] > 0); ++i)
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{
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BOOST_FPU_EXCEPTION_GUARD
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if(result < tools::min_value<T>())
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return 0; // short circuit further evaluation
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if(exponents[sorted_indexes[i]] == 1)
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result *= bases[sorted_indexes[i]] * exp(static_cast<T>(base_e_factors[sorted_indexes[i]]));
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else if(exponents[sorted_indexes[i]] == 0.5f)
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result *= sqrt(bases[sorted_indexes[i]] * exp(static_cast<T>(base_e_factors[sorted_indexes[i]])));
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else
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result *= pow(bases[sorted_indexes[i]] * exp(static_cast<T>(base_e_factors[sorted_indexes[i]])), exponents[sorted_indexes[i]]);
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BOOST_MATH_INSTRUMENT_VARIABLE(result);
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}
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result *= Lanczos::lanczos_sum_expG_scaled(static_cast<T>(n + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(r + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(N - n + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(N - r + 1))
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/
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( Lanczos::lanczos_sum_expG_scaled(static_cast<T>(N + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(x + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(n - x + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(r - x + 1))
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* Lanczos::lanczos_sum_expG_scaled(static_cast<T>(N - n - r + x + 1)));
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BOOST_MATH_INSTRUMENT_VARIABLE(result);
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return result;
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}
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template <class T, class Policy>
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T hypergeometric_pdf_lanczos_imp(T /*dummy*/, unsigned x, unsigned r, unsigned n, unsigned N, const boost::math::lanczos::undefined_lanczos&, const Policy& pol)
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{
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BOOST_MATH_STD_USING
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return exp(
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boost::math::lgamma(T(n + 1), pol)
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+ boost::math::lgamma(T(r + 1), pol)
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+ boost::math::lgamma(T(N - n + 1), pol)
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+ boost::math::lgamma(T(N - r + 1), pol)
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- boost::math::lgamma(T(N + 1), pol)
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- boost::math::lgamma(T(x + 1), pol)
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- boost::math::lgamma(T(n - x + 1), pol)
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- boost::math::lgamma(T(r - x + 1), pol)
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- boost::math::lgamma(T(N - n - r + x + 1), pol));
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}
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template <class T>
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inline T integer_power(const T& x, int ex)
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{
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if(ex < 0)
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return 1 / integer_power(x, -ex);
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switch(ex)
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{
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case 0:
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return 1;
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case 1:
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return x;
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case 2:
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return x * x;
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case 3:
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return x * x * x;
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case 4:
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return boost::math::pow<4>(x);
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case 5:
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return boost::math::pow<5>(x);
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case 6:
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return boost::math::pow<6>(x);
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case 7:
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return boost::math::pow<7>(x);
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case 8:
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return boost::math::pow<8>(x);
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}
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BOOST_MATH_STD_USING
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#ifdef __SUNPRO_CC
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return pow(x, T(ex));
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#else
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return pow(x, ex);
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#endif
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}
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template <class T>
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struct hypergeometric_pdf_prime_loop_result_entry
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{
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T value;
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const hypergeometric_pdf_prime_loop_result_entry* next;
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};
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#ifdef BOOST_MSVC
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#pragma warning(push)
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#pragma warning(disable:4510 4512 4610)
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#endif
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struct hypergeometric_pdf_prime_loop_data
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{
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const unsigned x;
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const unsigned r;
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const unsigned n;
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const unsigned N;
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unsigned prime_index;
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unsigned current_prime;
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};
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#ifdef BOOST_MSVC
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#pragma warning(pop)
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#endif
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template <class T>
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T hypergeometric_pdf_prime_loop_imp(hypergeometric_pdf_prime_loop_data& data, hypergeometric_pdf_prime_loop_result_entry<T>& result)
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{
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while(data.current_prime <= data.N)
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{
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unsigned base = data.current_prime;
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int prime_powers = 0;
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while(base <= data.N)
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{
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prime_powers += data.n / base;
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prime_powers += data.r / base;
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prime_powers += (data.N - data.n) / base;
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prime_powers += (data.N - data.r) / base;
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prime_powers -= data.N / base;
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prime_powers -= data.x / base;
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prime_powers -= (data.n - data.x) / base;
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prime_powers -= (data.r - data.x) / base;
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prime_powers -= (data.N - data.n - data.r + data.x) / base;
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base *= data.current_prime;
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}
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if(prime_powers)
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{
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T p = integer_power<T>(static_cast<T>(data.current_prime), prime_powers);
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if((p > 1) && (tools::max_value<T>() / p < result.value))
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{
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//
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// The next calculation would overflow, use recursion
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// to sidestep the issue:
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//
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hypergeometric_pdf_prime_loop_result_entry<T> t = { p, &result };
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data.current_prime = prime(++data.prime_index);
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return hypergeometric_pdf_prime_loop_imp<T>(data, t);
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}
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if((p < 1) && (tools::min_value<T>() / p > result.value))
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{
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//
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// The next calculation would underflow, use recursion
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// to sidestep the issue:
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//
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hypergeometric_pdf_prime_loop_result_entry<T> t = { p, &result };
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data.current_prime = prime(++data.prime_index);
|
||
|
|
return hypergeometric_pdf_prime_loop_imp<T>(data, t);
|
||
|
|
}
|
||
|
|
result.value *= p;
|
||
|
|
}
|
||
|
|
data.current_prime = prime(++data.prime_index);
|
||
|
|
}
|
||
|
|
//
|
||
|
|
// When we get to here we have run out of prime factors,
|
||
|
|
// the overall result is the product of all the partial
|
||
|
|
// results we have accumulated on the stack so far, these
|
||
|
|
// are in a linked list starting with "data.head" and ending
|
||
|
|
// with "result".
|
||
|
|
//
|
||
|
|
// All that remains is to multiply them together, taking
|
||
|
|
// care not to overflow or underflow.
|
||
|
|
//
|
||
|
|
// Enumerate partial results >= 1 in variable i
|
||
|
|
// and partial results < 1 in variable j:
|
||
|
|
//
|
||
|
|
hypergeometric_pdf_prime_loop_result_entry<T> const *i, *j;
|
||
|
|
i = &result;
|
||
|
|
while(i && i->value < 1)
|
||
|
|
i = i->next;
|
||
|
|
j = &result;
|
||
|
|
while(j && j->value >= 1)
|
||
|
|
j = j->next;
|
||
|
|
|
||
|
|
T prod = 1;
|
||
|
|
|
||
|
|
while(i || j)
|
||
|
|
{
|
||
|
|
while(i && ((prod <= 1) || (j == 0)))
|
||
|
|
{
|
||
|
|
prod *= i->value;
|
||
|
|
i = i->next;
|
||
|
|
while(i && i->value < 1)
|
||
|
|
i = i->next;
|
||
|
|
}
|
||
|
|
while(j && ((prod >= 1) || (i == 0)))
|
||
|
|
{
|
||
|
|
prod *= j->value;
|
||
|
|
j = j->next;
|
||
|
|
while(j && j->value >= 1)
|
||
|
|
j = j->next;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
return prod;
|
||
|
|
}
|
||
|
|
|
||
|
|
template <class T, class Policy>
|
||
|
|
inline T hypergeometric_pdf_prime_imp(unsigned x, unsigned r, unsigned n, unsigned N, const Policy&)
|
||
|
|
{
|
||
|
|
hypergeometric_pdf_prime_loop_result_entry<T> result = { 1, 0 };
|
||
|
|
hypergeometric_pdf_prime_loop_data data = { x, r, n, N, 0, prime(0) };
|
||
|
|
return hypergeometric_pdf_prime_loop_imp<T>(data, result);
|
||
|
|
}
|
||
|
|
|
||
|
|
template <class T, class Policy>
|
||
|
|
T hypergeometric_pdf_factorial_imp(unsigned x, unsigned r, unsigned n, unsigned N, const Policy&)
|
||
|
|
{
|
||
|
|
BOOST_MATH_STD_USING
|
||
|
|
BOOST_ASSERT(N <= boost::math::max_factorial<T>::value);
|
||
|
|
T result = boost::math::unchecked_factorial<T>(n);
|
||
|
|
T num[3] = {
|
||
|
|
boost::math::unchecked_factorial<T>(r),
|
||
|
|
boost::math::unchecked_factorial<T>(N - n),
|
||
|
|
boost::math::unchecked_factorial<T>(N - r)
|
||
|
|
};
|
||
|
|
T denom[5] = {
|
||
|
|
boost::math::unchecked_factorial<T>(N),
|
||
|
|
boost::math::unchecked_factorial<T>(x),
|
||
|
|
boost::math::unchecked_factorial<T>(n - x),
|
||
|
|
boost::math::unchecked_factorial<T>(r - x),
|
||
|
|
boost::math::unchecked_factorial<T>(N - n - r + x)
|
||
|
|
};
|
||
|
|
int i = 0;
|
||
|
|
int j = 0;
|
||
|
|
while((i < 3) || (j < 5))
|
||
|
|
{
|
||
|
|
while((j < 5) && ((result >= 1) || (i >= 3)))
|
||
|
|
{
|
||
|
|
result /= denom[j];
|
||
|
|
++j;
|
||
|
|
}
|
||
|
|
while((i < 3) && ((result <= 1) || (j >= 5)))
|
||
|
|
{
|
||
|
|
result *= num[i];
|
||
|
|
++i;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
return result;
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
template <class T, class Policy>
|
||
|
|
inline typename tools::promote_args<T>::type
|
||
|
|
hypergeometric_pdf(unsigned x, unsigned r, unsigned n, unsigned N, const Policy&)
|
||
|
|
{
|
||
|
|
BOOST_FPU_EXCEPTION_GUARD
|
||
|
|
typedef typename tools::promote_args<T>::type result_type;
|
||
|
|
typedef typename policies::evaluation<result_type, Policy>::type value_type;
|
||
|
|
typedef typename lanczos::lanczos<value_type, Policy>::type evaluation_type;
|
||
|
|
typedef typename policies::normalise<
|
||
|
|
Policy,
|
||
|
|
policies::promote_float<false>,
|
||
|
|
policies::promote_double<false>,
|
||
|
|
policies::discrete_quantile<>,
|
||
|
|
policies::assert_undefined<> >::type forwarding_policy;
|
||
|
|
|
||
|
|
value_type result;
|
||
|
|
if(N <= boost::math::max_factorial<value_type>::value)
|
||
|
|
{
|
||
|
|
//
|
||
|
|
// If N is small enough then we can evaluate the PDF via the factorials
|
||
|
|
// directly: table lookup of the factorials gives the best performance
|
||
|
|
// of the methods available:
|
||
|
|
//
|
||
|
|
result = detail::hypergeometric_pdf_factorial_imp<value_type>(x, r, n, N, forwarding_policy());
|
||
|
|
}
|
||
|
|
else if(N <= boost::math::prime(boost::math::max_prime - 1))
|
||
|
|
{
|
||
|
|
//
|
||
|
|
// If N is no larger than the largest prime number in our lookup table
|
||
|
|
// (104729) then we can use prime factorisation to evaluate the PDF,
|
||
|
|
// this is slow but accurate:
|
||
|
|
//
|
||
|
|
result = detail::hypergeometric_pdf_prime_imp<value_type>(x, r, n, N, forwarding_policy());
|
||
|
|
}
|
||
|
|
else
|
||
|
|
{
|
||
|
|
//
|
||
|
|
// Catch all case - use the lanczos approximation - where available -
|
||
|
|
// to evaluate the ratio of factorials. This is reasonably fast
|
||
|
|
// (almost as quick as using logarithmic evaluation in terms of lgamma)
|
||
|
|
// but only a few digits better in accuracy than using lgamma:
|
||
|
|
//
|
||
|
|
result = detail::hypergeometric_pdf_lanczos_imp(value_type(), x, r, n, N, evaluation_type(), forwarding_policy());
|
||
|
|
}
|
||
|
|
|
||
|
|
if(result > 1)
|
||
|
|
{
|
||
|
|
result = 1;
|
||
|
|
}
|
||
|
|
if(result < 0)
|
||
|
|
{
|
||
|
|
result = 0;
|
||
|
|
}
|
||
|
|
|
||
|
|
return policies::checked_narrowing_cast<result_type, forwarding_policy>(result, "boost::math::hypergeometric_pdf<%1%>(%1%,%1%,%1%,%1%)");
|
||
|
|
}
|
||
|
|
|
||
|
|
}}} // namespaces
|
||
|
|
|
||
|
|
#endif
|
||
|
|
|